PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G102300.1
Common NamePHAVU_010G102300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YC
Protein Properties Length: 123aa    MW: 13378.6 Da    PI: 8.7469
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G102300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC103.91.1e-322210419100
               NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100
                         h lPlarikki+k + +dvkmis eaP+++skacelfi elt rsw+ a + krrtl+k d+++av  td fdfl+  v +++
  Phvul.010G102300.1  22 HPLPLARIKKIMKkSGDDVKMISGEAPIIFSKACELFIEELTRRSWIMAIQGKRRTLHKEDLTSAVIATDLFDFLITLVSNSD 104
                         88**********825689**********************************************************9998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.29E-261896IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.8E-3024101IPR009072Histone-fold
PfamPF008082.8E-202487IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MRQAGAYSGL LCGGVSGRTG PHPLPLARIK KIMKKSGDDV KMISGEAPII FSKACELFIE  60
ELTRRSWIMA IQGKRRTLHK EDLTSAVIAT DLFDFLITLV SNSDSHPLGV PTTTTMEVET  120
IY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C9e-272210040117HapE
4g91_C9e-272210040117HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-176AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135116.12e-86hypothetical protein PHAVU_010G102300g
SwissprotQ9FMV56e-30NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
SwissprotQ9SMP04e-30NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLV7AP722e-86V7AP72_PHAVU; Uncharacterized protein
STRINGGLYMA12G34510.11e-72(Glycine max)
STRINGGLYMA13G35980.19e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105592841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.12e-31nuclear factor Y, subunit C1